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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
81
DNase-seq
76
ATAC-seq
64
single cell RNA-seq
62
ChIP-seq
56
total RNA-seq
6
snATAC-seq
4
RRBS
3
snDrop-seq
2
RNA microarray
2
WGBS
1
FAIRE-seq
1
Hi-C
1
pCHi-C
1
small RNA-seq
Assay category
164
DNA accessibility
121
Transcription
62
DNA binding
6
DNA methylation
1
3D chromatin structure
Target of assay
36
histone
36
histone modification
19
broad histone mark
17
control
17
narrow histone mark
9
transcription factor
3
RNA binding protein
3
other context
3
other post-translational modification
Date released
128
August, 2021
81
June, 2019
47
September, 2023
23
April, 2019
15
October, 2019
14
May, 2023
11
July, 2019
9
November, 2018
8
February, 2021
7
December, 2018
7
January, 2019
5
May, 2019
3
December, 2019
1
March, 2020
1
October, 2017
Available data
189
bed narrowPeak
153
bam
135
bigWig
116
bigBed narrowPeak
79
bed bed3+
79
bed broadPeak
79
bigBed broadPeak
64
xls
62
txt
24
fastq
19
tsv
6
bed bedMethyl
6
bigBed bedMethyl
5
csv
1
hic
Organism
360
Homo sapiens
Biosample type
324
tissue
36
primary cell
cell line
Organ
854
pancreas
684
connective tissue
491
adipose tissue
445
epithelium
390
liver
335
kidney
287
heart
286
brain
170
vasculature
164
blood vessel
159
bone element
122
limb
96
musculature of body
75
artery
61
eye
43
nerve
29
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
8
blood
8
bodily fluid
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
313
AMP
47
KPMP
Genome assembly (visualization)
209
GRCh38
131
hg19
Lab
171
AMP-T2D consortium
142
Katalin Susztak, Upenn
47
KPMP
Audit category:
8
inconsistent ontology term
7
audit script error
biosample_type!
cell line
BIOSAMPLE
ASSAY
360 results
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DNase-seq
ATAC-seq
single cell RNA-seq
ChIP-seq
total RNA-seq
snATAC-seq
RRBS
snDrop-seq
RNA microarray
WGBS
FAIRE-seq
Hi-C
pCHi-C
small RNA-seq
tissue
kidney
13
75
64
27
49
6
1
1
1
spleen
1
1
20
2
1
renal cortex interstitium
11
renal pelvis
10
right kidney
10
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primary cell
epithelial cell of proximal tubule
1
10
1
1
kidney epithelial cell
1
5
1
1
kidney tubule cell
3
1
kidney glomerular epithelial cell
2
1
renal cortical epithelial cell
1
1
1
+ See 3 more…
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