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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
97
ChIP-seq
89
total RNA-seq
9
WGBS
6
RRBS
5
ATAC-seq
5
DNase-seq
1
FAIRE-seq
Assay category
97
DNA binding
89
Transcription
15
DNA methylation
11
DNA accessibility
Target of assay
histone modification
198
histone
109
broad histone mark
88
narrow histone mark
50
control
47
transcription factor
8
RNA binding protein
3
chromatin remodeller
Date released
619
February, 2021
313
May, 2020
258
August, 2021
239
May, 2021
212
August, 2017
200
May, 2022
199
February, 2023
199
June, 2019
168
July, 2018
108
July, 2019
95
October, 2019
63
December, 2017
59
September, 2020
51
March, 2020
49
April, 2018
47
September, 2023
46
October, 2018
45
November, 2019
41
September, 2018
28
May, 2019
27
November, 2018
25
February, 2020
23
February, 2018
20
April, 2019
19
April, 2020
18
November, 2017
16
January, 2021
15
May, 2023
11
October, 2017
11
September, 2017
10
December, 2019
10
November, 2020
7
August, 2020
7
December, 2018
7
January, 2018
5
March, 2019
4
August, 2018
3
June, 2018
3
March, 2023
3
October, 2022
1
August, 2022
1
January, 2019
Available data
184
fastq
179
bam
149
bigWig
89
tsv
34
bed narrowPeak
21
bed bed3+
12
bigBed narrowPeak
11
tagAlign
6
bed bedMethyl
6
bigBed bedMethyl
4
bed broadPeak
4
bigBed broadPeak
Organism
211
Homo sapiens
Biosample type
160
tissue
31
in vitro differentiated cells
21
primary cell
Organ
122
pancreas
56
connective tissue
25
adipose tissue
21
liver
15
epithelium
7
musculature of body
Project
212
AMP
Genome assembly (visualization)
153
hg19
146
GRCh38
Lab
212
AMP-T2D consortium
Audit category:
23
missing controlled_by
Audit category:
6
inconsistent control read length
biosample_type!
cell line
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
212 results
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Clear Filters
ChIP-seq
total RNA-seq
WGBS
RRBS
ATAC-seq
DNase-seq
FAIRE-seq
tissue
islet of Langerhans
14
89
1
1
liver
15
3
1
white adipose tissue
12
subcutaneous abdominal adipose tissue
5
3
skeletal muscle tissue
3
4
+ See 4 more…
in vitro differentiated cells
adipocyte
30
1
primary cell
pancreatic alpha cell
6
1
pancreatic beta cell
6
1
skeletal muscle myoblast
3
1
2
pancreatic acinar cell
1
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