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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
425
ChIP-seq
Assay category
425
DNA binding
Target of assay
832
histone modification
831
histone
425
narrow histone mark
406
broad histone mark
223
control
99
transcription factor
33
RNA binding protein
3
chromatin remodeller
3
other context
3
other post-translational modification
2
nucleotide modification
Date released
138
October, 2019
72
August, 2017
52
May, 2021
34
May, 2019
31
November, 2017
27
May, 2020
23
April, 2019
15
September, 2018
11
June, 2019
11
October, 2018
3
December, 2017
2
August, 2021
2
January, 2019
2
March, 2020
2
October, 2017
Available data
366
bigWig
356
bed narrowPeak
347
bam
157
tagAlign
134
bigBed narrowPeak
69
fastq
23
bed broadPeak
9
bed bed3+
8
bigBed broadPeak
1
tagAlign bed3+
Organism
423
Homo sapiens
Biosample type
309
tissue
115
primary cell
in vitro differentiated cells
cell line
1
stem cell
Organ
117
brain
63
pancreas
46
liver
35
epithelium
26
vasculature
25
blood vessel
25
heart
17
connective tissue
15
kidney
15
limb
13
musculature of body
12
adipose tissue
8
nerve
6
artery
6
vein
4
gonad
4
ovary
3
eye
2
spleen
1
lymph node
1
pituitary gland
Project
383
AMP
42
T1D
Genome assembly (visualization)
352
hg19
339
GRCh38
Lab
375
AMP-T2D consortium
50
Kyle Gaulton, UCSD
Audit category:
11
inconsistent ontology term
Audit category:
27
missing controlled_by
Audit category:
9
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
biosample_type!
cell line
in vitro differentiated cells
BIOSAMPLE
ASSAY
425 results
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Clear Filters
ChIP-seq
tissue
liver
42
islet of Langerhans
37
subcutaneous abdominal adipose tissue
11
kidney
10
heart left ventricle
9
+ See 99 more…
primary cell
monocyte
41
pancreatic endocrine cell
12
CD8-positive, alpha-beta T cell
10
pancreatic ductal cell
7
endothelial cell of umbilical vein
6
+ See 17 more…
stem cell
hESC
1
See all biosamples
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