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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
368
ChIP-seq
Assay category
368
DNA binding
Target of assay
705
histone
705
histone modification
368
narrow histone mark
337
broad histone mark
181
control
79
transcription factor
34
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
138
October, 2019
August, 2017
52
May, 2021
34
May, 2019
31
November, 2017
27
May, 2020
23
April, 2019
15
May, 2024
15
September, 2018
11
June, 2019
11
October, 2018
3
December, 2017
2
August, 2021
2
January, 2019
2
March, 2020
2
October, 2017
Available data
333
bed narrowPeak
333
bigWig
307
bam
132
tagAlign
122
bigBed narrowPeak
29
fastq
8
bed broadPeak
3
bed bed3+
3
bigBed broadPeak
1
tagAlign bed3+
Organism
368
Homo sapiens
Biosample type
274
tissue
93
primary cell
in vitro differentiated cells
cell line
1
stem cell
Organ
117
brain
40
heart
33
liver
29
pancreas
27
epithelium
26
vasculature
25
blood vessel
15
kidney
15
limb
8
nerve
6
artery
6
musculature of body
6
vein
5
connective tissue
4
gonad
4
ovary
3
eye
2
spleen
1
lymph node
1
pituitary gland
Project
326
AMP
42
T1D
Genome assembly (visualization)
314
GRCh38
304
hg19
Lab
303
AMP-T2D consortium
50
Kyle Gaulton, UCSD
15
Patrick T. Ellinor, Broad
Audit category:
11
inconsistent ontology term
Audit category:
16
missing controlled_by
Audit category:
2
inconsistent control read length
biosample_type!
cell line
in vitro differentiated cells
month_released!
August, 2017
BIOSAMPLE
ASSAY
368 results
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Clear Filters
ChIP-seq
tissue
liver
29
islet of Langerhans
23
left cardiac atrium
15
kidney
10
heart left ventricle
9
+ See 96 more…
primary cell
monocyte
41
CD8-positive, alpha-beta T cell
10
pancreatic ductal cell
7
endothelial cell of umbilical vein
6
epithelial cell of proximal tubule
4
+ See 14 more…
stem cell
hESC
1
See all biosamples
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