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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
478
ChIP-seq
Assay category
478
DNA binding
Target of assay
867
histone modification
866
histone
440
narrow histone mark
426
broad histone mark
223
control
104
transcription factor
38
RNA binding protein
3
chromatin remodeller
3
other context
3
other post-translational modification
2
nucleotide modification
Date released
138
October, 2019
76
August, 2017
52
May, 2021
39
May, 2019
34
November, 2017
27
April, 2019
27
May, 2020
22
October, 2018
20
May, 2024
15
June, 2019
15
September, 2018
5
December, 2017
2
August, 2021
2
January, 2019
2
March, 2020
2
October, 2017
Available data
418
bigWig
407
bed narrowPeak
380
bam
164
bigBed narrowPeak
157
tagAlign
89
fastq
28
bed broadPeak
13
bigBed broadPeak
11
bed bed3+
1
tagAlign bed3+
Organism
476
Homo sapiens
Biosample type
352
tissue
125
primary cell
cell line
in vitro differentiated cells
1
stem cell
Organ
120
brain
71
pancreas
51
heart
48
liver
40
epithelium
31
vasculature
29
blood vessel
23
connective tissue
18
kidney
17
adipose tissue
15
limb
13
musculature of body
8
nerve
7
artery
6
vein
4
eye
4
gonad
4
ovary
2
spleen
1
lymph node
1
pituitary gland
Project
436
AMP
42
T1D
Genome assembly (visualization)
390
GRCh38
384
hg19
Lab
408
AMP-T2D consortium
50
Kyle Gaulton, UCSD
20
Patrick T. Ellinor, Broad
Audit category:
14
inconsistent ontology term
Audit category:
28
missing controlled_by
Audit category:
9
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
biosample_type!
cell line
in vitro differentiated cells
BIOSAMPLE
ASSAY
478 results
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Clear Filters
ChIP-seq
tissue
liver
43
islet of Langerhans
39
left cardiac atrium
20
heart left ventricle
12
body of pancreas
11
+ See 102 more…
primary cell
monocyte
41
pancreatic endocrine cell
12
CD8-positive, alpha-beta T cell
10
skeletal muscle myoblast
8
pancreatic ductal cell
7
+ See 17 more…
stem cell
hESC
1
See all biosamples
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