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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
400
ChIP-seq
Assay category
400
DNA binding
Target of assay
791
histone modification
790
histone
459
transcription factor
400
narrow histone mark
390
broad histone mark
100
RNA binding protein
88
recombinant protein
33
chromatin remodeller
23
control
5
other context
5
other post-translational modification
Date released
117
October, 2019
51
May, 2021
48
August, 2017
34
May, 2019
30
November, 2017
27
May, 2020
23
April, 2019
15
May, 2024
15
September, 2018
11
June, 2019
11
October, 2018
4
August, 2021
4
November, 2019
3
December, 2017
3
January, 2019
3
March, 2020
1
October, 2017
Available data
400
bigWig
389
bed narrowPeak
364
bam
162
tagAlign
144
bigBed narrowPeak
77
fastq
29
bed broadPeak
14
bigBed broadPeak
9
bed bed3+
1
tagAlign bed3+
Organism
398
Homo sapiens
Biosample type
268
tissue
112
primary cell
in vitro differentiated cells
19
cell line
1
stem cell
Organ
106
brain
68
pancreas
47
liver
40
epithelium
40
heart
25
vasculature
24
blood vessel
15
kidney
14
limb
11
musculature of body
8
nerve
6
artery
6
connective tissue
5
vein
2
adipose tissue
2
spleen
1
blood
1
bodily fluid
1
eye
1
pituitary gland
Project
356
AMP
44
T1D
Genome assembly (visualization)
369
hg19
368
GRCh38
Lab
333
AMP-T2D consortium
50
Kyle Gaulton, UCSD
15
Patrick T. Ellinor, Broad
2
Bing Ren, UCSD
Audit category:
17
inconsistent ontology term
Audit category:
28
missing controlled_by
Audit category:
14
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
biosample_type!
in vitro differentiated cells
assay_slims!
3D chromatin structure
BIOSAMPLE
ASSAY
400 results
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ChIP-seq
tissue
liver
34
left cardiac atrium
15
islet of Langerhans
12
kidney
10
heart left ventricle
9
+ See 98 more…
primary cell
monocyte
40
pancreatic endocrine cell
12
CD8-positive, alpha-beta T cell
10
pancreatic ductal cell
7
skeletal muscle myoblast
6
+ See 16 more…
cell line
HepG2
9
EndoC_BH1
6
Panc1
3
GM12878
1
stem cell
hESC
1
See all biosamples
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