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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
178
ATAC-seq
82
snATAC-seq
Assay category
437
Transcription
260
DNA accessibility
135
DNA binding
47
DNA methylation
8
3D chromatin structure
1
DNA sequencing
Date released
98
May, 2022
70
August, 2021
27
February, 2021
16
January, 2021
13
February, 2023
11
May, 2023
10
April, 2020
7
August, 2020
4
March, 2019
3
September, 2020
1
October, 2017
Available data
102
bed narrowPeak
64
xls
60
zippedFastqFolder
57
fastq
31
bigWig
19
bam
2
bed broadPeak
Organism
259
Homo sapiens
Biosample type
155
tissue
105
primary cell
in vitro differentiated cells
Organ
93
pancreas
81
kidney
49
epithelium
20
liver
10
lung
8
blood
8
bodily fluid
Project
124
AMP
97
HPAP
29
T1D
10
LungMap
Genome assembly (visualization)
88
GRCh38
41
hg19
Lab
AMP-T2D consortium
97
Klaus Kaestner, Upenn
81
Katalin Susztak, Upenn
47
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
10
Xin Sun, UCSD
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
27
audit script error
biosample_type!
in vitro differentiated cells
lab.title!
AMP-T2D consortium
BIOSAMPLE
ASSAY
260 results
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Clear Filters
ATAC-seq
snATAC-seq
tissue
kidney
75
6
islet of Langerhans
34
6
liver
20
lung
10
pancreas
4
primary cell
Langerhans cell
48
pancreatic alpha cell
29
pancreatic beta cell
16
peripheral blood mononuclear cell
8
pancreatic acinar cell
4
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