Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
29
Hi-C
Assay category
1780
Transcription
1673
DNA binding
789
DNA accessibility
97
DNA methylation
29
3D chromatin structure
1
DNA sequencing
Date released
8
July, 2019
8
March, 2020
3
August, 2021
3
October, 2019
3
October, 2022
2
November, 2019
1
December, 2018
1
March, 2023
Available data
19
hic
16
bedpe bed3+
5
bed bed3+
5
bigWig
5
hdf5
3
cool
bedpe
1
fastq
Organism
29
Homo sapiens
Biosample type
15
tissue
10
primary cell
4
cell line
in vitro differentiated cells
Organ
8
epithelium
8
pancreas
6
musculature of body
5
blood vessel
5
vasculature
4
limb
4
liver
3
brain
3
heart
2
vein
1
connective tissue
1
kidney
Project
25
AMP
3
HPAP
1
ITG
Genome assembly (visualization)
22
hg19
2
GRCh38
Lab
22
AMP-T2D consortium
3
Klaus Kaestner, Upenn
2
Bing Ren, UCSD
1
ITG
1
Katalin Susztak, Upenn
Audit category:
4
audit script error
1
inconsistent ontology term
Audit category:
1
inconsistent assembly
biosample_type!
in vitro differentiated cells
assay_title!
Capture-C
files.file_type!
bedpe
BIOSAMPLE
ASSAY
29 results
search-icon
table-tab-icon
Clear Filters
Hi-C
tissue
gastrocnemius medialis
4
islet of Langerhans
2
psoas muscle
2
aorta
1
heart
1
+ See 5 more…
primary cell
endothelial cell of umbilical vein
2
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
chondrocytes
1
+ See 4 more…
cell line
HepG2
2
EndoC_BH1
1
Panc1
1
See all biosamples
Download