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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
89
total RNA-seq
68
ChIP-seq
9
WGBS
6
RRBS
5
ATAC-seq
4
DNase-seq
1
FAIRE-seq
Assay category
89
Transcription
68
DNA binding
15
DNA methylation
10
DNA accessibility
Target of assay
162
histone modification
histone
89
broad histone mark
72
narrow histone mark
42
control
25
transcription factor
4
RNA binding protein
1
chromatin remodeller
Date released
689
February, 2021
318
November, 2017
314
May, 2020
269
August, 2021
200
May, 2022
199
June, 2019
189
February, 2023
182
August, 2017
168
July, 2018
148
May, 2021
110
October, 2019
108
July, 2019
88
November, 2018
59
September, 2020
53
March, 2020
49
April, 2018
47
September, 2023
46
November, 2019
46
October, 2018
44
December, 2017
41
September, 2018
35
December, 2018
28
May, 2019
25
February, 2020
23
January, 2019
20
April, 2019
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
October, 2017
11
September, 2017
8
December, 2019
7
August, 2020
5
March, 2019
5
March, 2023
5
May, 2024
4
January, 2018
4
October, 2022
3
August, 2018
3
June, 2018
1
August, 2022
Available data
156
fastq
151
bam
127
bigWig
89
tsv
17
bed narrowPeak
14
bed bed3+
11
bigBed narrowPeak
9
tagAlign
6
bed bedMethyl
6
bigBed bedMethyl
3
bed broadPeak
3
bigBed broadPeak
Organism
181
Homo sapiens
Biosample type
161
tissue
in vitro differentiated cells
21
primary cell
Organ
122
pancreas
25
adipose tissue
25
connective tissue
22
liver
15
epithelium
7
musculature of body
Project
182
AMP
Genome assembly (visualization)
130
hg19
123
GRCh38
Lab
182
AMP-T2D consortium
Audit category:
18
missing controlled_by
biosample_type!
in vitro differentiated cells
assay_title!
Capture-C
target.investigated_as!
histone
BIOSAMPLE
ASSAY
182 results
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Clear Filters
total RNA-seq
ChIP-seq
WGBS
RRBS
ATAC-seq
DNase-seq
FAIRE-seq
tissue
islet of Langerhans
89
14
1
1
liver
16
3
1
white adipose tissue
12
subcutaneous abdominal adipose tissue
5
3
skeletal muscle tissue
3
4
+ See 4 more…
primary cell
pancreatic alpha cell
6
1
pancreatic beta cell
6
1
skeletal muscle myoblast
3
1
2
pancreatic acinar cell
1
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