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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
28
pCHi-C
13
total RNA-seq
7
Hi-C
4
ATAC-seq
3
ChIP-seq
Assay category
13
Transcription
7
3D chromatin structure
4
DNA accessibility
3
DNA binding
Target of assay
3
histone
3
histone modification
3
narrow histone mark
Date released
641
February, 2021
397
November, 2017
284
August, 2017
272
October, 2019
271
August, 2021
194
May, 2020
163
June, 2019
120
July, 2018
115
May, 2019
101
February, 2023
87
November, 2018
80
April, 2019
77
July, 2019
74
October, 2018
66
May, 2022
61
May, 2021
56
November, 2019
55
March, 2020
51
December, 2017
47
September, 2023
40
May, 2024
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
10
November, 2020
8
January, 2021
6
April, 2018
6
September, 2017
5
March, 2019
4
January, 2018
4
March, 2023
3
December, 2019
1
August, 2022
1
October, 2022
Available data
41
tsv
18
bigWig
14
bam
7
bedpe bed3+
7
hic
3
bed narrowPeak
Organism
55
Homo sapiens
Biosample type
40
tissue
11
cell line
in vitro differentiated cells
4
stem cell
primary cell
Organ
14
pancreas
7
heart
5
epithelium
5
musculature of body
3
blood vessel
3
liver
3
vasculature
2
brain
2
connective tissue
2
intestine
2
kidney
1
adipose tissue
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
small intestine
1
spleen
1
stomach
1
thymus
1
urinary bladder
Project
48
AMP
7
T1D
Genome assembly (visualization)
25
hg19
14
GRCh38
Lab
55
AMP-T2D consortium
Audit category:
10
inconsistent ontology term
biosample_type!
in vitro differentiated cells
primary cell
assay_title!
Capture-C
BIOSAMPLE
ASSAY
55 results
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Clear Filters
pCHi-C
total RNA-seq
Hi-C
ATAC-seq
ChIP-seq
tissue
islet of Langerhans
2
2
2
psoas muscle
1
2
2
aorta
1
1
1
heart left ventricle
1
1
1
heart right ventricle
1
1
1
+ See 16 more…
cell line
EndoC_BH1
2
2
1
early embryonic cell
2
MCF-7
1
RCC 7860 VHL
1
RCC 7860 vector
1
+ See 1 more…
stem cell
mesenchymal stem cell
1
mesendoderm
1
neural progenitor cell (neural stem cell)
1
trophoblast
1
See all biosamples
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