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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
342
ChIP-seq
Assay category
342
DNA binding
Target of assay
281
histone
281
histone modification
156
narrow histone mark
125
broad histone mark
56
control
5
transcription factor
Date released
84
May, 2021
78
November, 2017
55
August, 2017
50
May, 2020
49
October, 2019
14
October, 2017
8
February, 2021
4
August, 2021
Available data
2215
bam
2089
bigWig
1273
bed narrowPeak
1052
tsv
738
fastq
734
bigBed narrowPeak
342
tagAlign
152
txt
102
bed broadPeak
79
bigBed broadPeak
73
zippedFastqFolder
64
xls
30
bed bedMethyl
30
bigBed bedMethyl
22
bed bed3+
12
hic
9
bedpe bed3+
8
csv
7
bed bed3
4
hdf5
4
tar
1
tagAlign bed3+
1
vcf
Organism
342
Homo sapiens
Biosample type
222
tissue
100
primary cell
in vitro differentiated cells
20
cell line
Organ
118
brain
86
liver
pancreas
15
musculature of body
8
adipose tissue
8
connective tissue
6
artery
6
blood vessel
6
heart
6
vasculature
4
epithelium
1
pituitary gland
Project
258
AMP
84
T1D
Genome assembly (visualization)
222
GRCh38
209
hg19
Lab
258
AMP-T2D consortium
84
Kyle Gaulton, UCSD
Audit category:
4
missing controlled_by
Audit category:
11
inconsistent control read length
1
inconsistent assembly
biosample_type!
in vitro differentiated cells
assay_title!
DNase-seq
organ_slims!
pancreas
BIOSAMPLE
ASSAY
342 results
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Clear Filters
ChIP-seq
tissue
liver
70
substantia nigra
16
caudate nucleus
15
layer of hippocampus
15
skeletal muscle tissue
15
+ See 41 more…
primary cell
monocyte
84
skeletal muscle myoblast
12
hepatocyte
4
cell line
HepG2
12
smooth muscle cell of the coronary artery
6
iPSC derived cell line
2
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