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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
91
ATAC-seq
89
total RNA-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
snATAC-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
single cell RNA-seq
Assay category
91
DNA accessibility
90
Transcription
Date released
662
February, 2021
406
November, 2017
343
August, 2017
341
May, 2020
306
October, 2019
271
August, 2021
267
May, 2021
218
June, 2019
187
February, 2023
178
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
59
September, 2020
56
March, 2020
56
November, 2019
51
December, 2017
April, 2018
47
September, 2023
40
May, 2024
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
16
November, 2020
15
May, 2023
11
September, 2017
9
April, 2020
8
December, 2019
7
August, 2020
5
March, 2019
5
March, 2023
4
January, 2018
4
October, 2022
3
August, 2018
3
June, 2018
Available data
76
fastq
63
bed narrowPeak
16
tsv
5
bed bed3
4
txt
Organism
186
Homo sapiens
Biosample type
93
tissue
88
primary cell
in vitro differentiated cells
6
cell line
Organ
54
pancreas
52
epithelium
36
heart
35
artery
35
blood vessel
35
vasculature
31
eye
8
bone element
8
skeleton
1
adipose tissue
1
brain
1
connective tissue
Project
90
AMP
76
HPAP
21
T1D
Genome assembly (visualization)
35
GRCh38
33
hg19
Lab
90
AMP-T2D consortium
76
Klaus Kaestner, Upenn
21
Kyle Gaulton, UCSD
Audit category:
6
inconsistent ontology term
biosample_type!
in vitro differentiated cells
assay_title!
snATAC-seq
month_released!
April, 2018
BIOSAMPLE
ASSAY
187 results
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Clear Filters
ATAC-seq
total RNA-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
CRISPR genome editing followed by sgRNA sequencing
single cell RNA-seq
tissue
coronary artery
35
retina
15
2
islet of Langerhans
11
5
pigmented layer of retina
12
2
acetabular part of hip bone
1
1
+ See 6 more…
primary cell
exocrine cell
39
pancreatic alpha cell
27
pancreatic beta cell
10
gabaergic neuron
3
glutamatergic neuron
3
+ See 2 more…
cell line
EndoC_BH1
3
2
1
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