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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
24
ATAC-seq
20
total RNA-seq
13
ChIP-seq
2
Hi-C
1
GRO-seq
Assay category
24
DNA accessibility
20
Transcription
13
DNA binding
2
3D chromatin structure
Target of assay
10
histone
10
histone modification
6
broad histone mark
4
narrow histone mark
2
control
1
RNA binding protein
1
transcription factor
Date released
662
February, 2021
406
November, 2017
343
August, 2017
341
May, 2020
306
October, 2019
271
August, 2021
267
May, 2021
218
June, 2019
187
February, 2023
178
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
59
September, 2020
56
March, 2020
56
November, 2019
51
December, 2017
49
April, 2018
47
September, 2023
40
May, 2024
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
16
November, 2020
15
May, 2023
11
September, 2017
9
April, 2020
8
December, 2019
7
August, 2020
5
March, 2019
5
March, 2023
4
January, 2018
4
October, 2022
3
August, 2018
3
June, 2018
Available data
54
bam
35
bigWig
32
bed narrowPeak
20
tsv
2
bedpe bed3+
2
hic
1
fastq
Organism
60
Homo sapiens
Biosample type
42
tissue
17
cell line
in vitro differentiated cells
1
stem cell
Organ
55
pancreas
16
epithelium
2
adipose tissue
2
connective tissue
1
blood
1
bodily fluid
1
musculature of body
Project
60
AMP
Genome assembly (visualization)
57
hg19
52
GRCh38
1
hg18
Lab
60
AMP-T2D consortium
Audit category:
17
inconsistent ontology term
biosample_type!
in vitro differentiated cells
assay_title!
snATAC-seq
BIOSAMPLE
ASSAY
60 results
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Clear Filters
ATAC-seq
total RNA-seq
ChIP-seq
Hi-C
GRO-seq
tissue
islet of Langerhans
19
19
1
adipose tissue
1
adipose tissue(adipose white tissue)
1
skeletal muscle tissue
1
cell line
EndoC_BH1
1
1
13
1
GM12878
1
stem cell
hESC
1
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