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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1156
total RNA-seq
1106
ChIP-seq
217
ATAC-seq
206
DNase-seq
100
single cell RNA-seq
18
small RNA-seq
17
WGBS
2
Hi-C
Assay category
217
DNA accessibility
Date released
64
August, 2021
35
February, 2023
21
November, 2019
18
February, 2021
14
September, 2018
13
May, 2021
11
May, 2023
8
October, 2017
7
August, 2020
6
July, 2019
5
August, 2017
5
September, 2017
4
October, 2019
3
September, 2020
2
March, 2019
1
November, 2020
Available data
191
bed narrowPeak
94
bam
64
xls
51
bigWig
42
fastq
24
bigBed narrowPeak
2
bed bed3
1
bed broadPeak
Organism
217
Homo sapiens
Biosample type
158
tissue
49
primary cell
in vitro differentiated cells
10
cell line
Organ
75
kidney
59
pancreas
47
heart
46
blood vessel
46
vasculature
45
artery
34
epithelium
8
bone element
8
limb
8
skeleton
5
connective tissue
3
adipose tissue
3
liver
2
brain
1
nerve
1
spleen
Project
207
AMP
10
HPAP
Genome assembly (visualization)
219
hg19
217
GRCh38
Lab
129
AMP-T2D consortium
75
Katalin Susztak, Upenn
10
Klaus Kaestner, Upenn
1
Bing Ren, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
4
inconsistent ontology term
1
inconsistent replicate
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
217 results
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Clear Filters
ATAC-seq
tissue
kidney
75
coronary artery
36
islet of Langerhans
22
body of pancreas
4
heart left ventricle
2
+ See 19 more…
primary cell
monocyte
13
pancreatic alpha cell
13
pancreatic beta cell
10
pancreatic acinar cell
5
pancreatic ductal cell
4
+ See 3 more…
cell line
smooth muscle cell of the coronary artery
8
EndoC_BH1
1
HepG2
1
See all biosamples
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