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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1563
ChIP-seq
1397
total RNA-seq
489
ATAC-seq
360
single cell RNA-seq
202
DNase-seq
87
RNA microarray
84
snATAC-seq
68
WGBS
52
pCHi-C
30
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
STARR-seq
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
GRO-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
202
DNA accessibility
Date released
187
June, 2019
10
October, 2019
November, 2018
4
August, 2017
1
November, 2020
Available data
199
bam
199
bed narrowPeak
199
bigBed narrowPeak
199
bigWig
196
bed broadPeak
196
bigBed broadPeak
195
bed bed3+
2
fastq
Organism
202
Homo sapiens
Biosample type
169
tissue
31
primary cell
2
cell line
in vitro differentiated cells
Organ
81
kidney
36
limb
33
musculature of body
30
brain
30
heart
19
epithelium
18
ureter
11
vasculature
9
blood vessel
7
connective tissue
6
pancreas
4
artery
4
eye
3
liver
2
nerve
2
vein
1
adipose tissue
Project
202
AMP
Genome assembly (visualization)
197
GRCh38
176
hg19
Lab
202
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
biosample_type!
in vitro differentiated cells
month_released!
November, 2018
BIOSAMPLE
ASSAY
202 results
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DNase-seq
tissue
heart
18
muscle of arm
17
kidney
13
muscle of leg
13
brain
12
+ See 38 more…
primary cell
cardiac fibroblast
3
kidney tubule cell
3
endothelial cell of umbilical vein
2
glomerular visceral epithelial cell
2
kidney glomerular epithelial cell
2
+ See 18 more…
cell line
Panc1
1
glomerular visceral epithelial cell
1
See all biosamples
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