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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1633
ChIP-seq
1397
total RNA-seq
489
ATAC-seq
361
single cell RNA-seq
211
DNase-seq
87
RNA microarray
84
snATAC-seq
75
WGBS
52
pCHi-C
30
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
GRO-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
361
Transcription
30
3D chromatin structure
Target of assay
3
control
Date released
109
August, 2021
48
July, 2018
47
September, 2023
43
April, 2018
40
September, 2020
34
May, 2022
18
February, 2021
11
July, 2019
9
April, 2020
8
March, 2020
3
August, 2018
3
June, 2018
3
May, 2023
3
October, 2019
3
October, 2022
2
November, 2019
1
December, 2018
1
December, 2019
1
February, 2023
1
March, 2019
1
March, 2023
1
November, 2018
1
September, 2018
Available data
203
tsv
129
fastq
105
bigWig
100
bam
52
zippedFastqFolder
19
hic
16
bedpe bed3+
13
txt
8
csv
5
bed bed3+
5
hdf5
3
cool
1
bedpe
Organism
391
Homo sapiens
Biosample type
197
primary cell
190
tissue
in vitro differentiated cells
4
cell line
Organ
96
heart
83
pancreas
78
epithelium
65
kidney
11
blood vessel
11
vasculature
9
lung
7
musculature of body
6
brain
5
connective tissue
5
liver
4
limb
2
artery
2
vein
Project
246
AMP
88
HPAP
47
KPMP
9
LungMap
1
ITG
Genome assembly (visualization)
123
hg19
102
GRCh38
Lab
231
AMP-T2D consortium
88
Klaus Kaestner, Upenn
47
KPMP
12
Katalin Susztak, Upenn
9
Xin Sun, UCSD
3
Bing Ren, UCSD
1
ITG
Audit category:
9
audit script error
8
inconsistent ontology term
Audit category:
1
inconsistent assembly
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
391 results
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Clear Filters
single cell RNA-seq
Hi-C
primary cell
Langerhans cell
85
pancreatic acinar cell
12
1
pancreatic alpha cell
12
1
pancreatic beta cell
12
1
pancreatic delta cell
11
+ See 20 more…
tissue
kidney
64
1
heart left ventricle
18
1
heart right ventricle
17
1
left cardiac atrium
18
right cardiac atrium
18
+ See 17 more…
cell line
HepG2
2
EndoC_BH1
1
Panc1
1
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