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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1633
ChIP-seq
1397
total RNA-seq
489
ATAC-seq
356
single cell RNA-seq
211
DNase-seq
85
RNA microarray
75
WGBS
55
snATAC-seq
52
pCHi-C
26
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
GRO-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
26
3D chromatin structure
Date released
8
July, 2019
8
March, 2020
3
August, 2021
2
November, 2019
2
October, 2019
1
December, 2018
1
March, 2019
1
March, 2023
Available data
15
hic
13
bedpe bed3+
5
bed bed3+
5
bigWig
5
hdf5
1
bedpe
1
fastq
Organism
26
Homo sapiens
Biosample type
16
tissue
6
primary cell
4
cell line
in vitro differentiated cells
Organ
6
musculature of body
6
pancreas
4
blood vessel
4
epithelium
4
limb
4
liver
4
vasculature
3
brain
3
heart
1
connective tissue
1
kidney
1
vein
Project
25
AMP
1
ITG
Genome assembly (visualization)
19
hg19
2
GRCh38
Lab
21
AMP-T2D consortium
3
Bing Ren, UCSD
1
ITG
1
Katalin Susztak, Upenn
Audit category:
audit script error
1
inconsistent ontology term
Audit category:
1
inconsistent assembly
biosample_type!
in vitro differentiated cells
audit.ERROR.category!
audit script error
BIOSAMPLE
ASSAY
26 results
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Hi-C
tissue
gastrocnemius medialis
4
islet of Langerhans
3
psoas muscle
2
aorta
1
heart
1
+ See 5 more…
primary cell
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
chondrocytes
1
endothelial cell of hepatic sinusoid
1
+ See 1 more…
cell line
HepG2
2
EndoC_BH1
1
Panc1
1
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