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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1498
ChIP-seq
1116
total RNA-seq
311
ATAC-seq
211
DNase-seq
209
single cell RNA-seq
87
RNA microarray
35
pCHi-C
28
WGBS
22
Hi-C
21
RRBS
18
small RNA-seq
5
FAIRE-seq
3
snDrop-seq
2
Capture-C
2
snATAC-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
DNAme array
1
GRO-seq
1
MPRA
Assay category
22
3D chromatin structure
Date released
8
July, 2019
8
March, 2020
3
October, 2019
2
November, 2019
1
December, 2018
Available data
12
hic
11
bedpe bed3+
5
bed bed3+
5
bigWig
5
hdf5
1
fastq
Organism
22
Homo sapiens
Biosample type
13
tissue
6
primary cell
in vitro differentiated cells
3
cell line
Organ
6
musculature of body
5
blood vessel
5
epithelium
5
vasculature
4
limb
4
pancreas
3
brain
3
heart
3
liver
2
vein
1
connective tissue
Project
22
AMP
Genome assembly (visualization)
17
hg19
1
GRCh38
Lab
22
AMP-T2D consortium
3
Bing Ren, UCSD
3
Klaus Kaestner, Upenn
1
ITG
1
Katalin Susztak, Upenn
Audit category:
1
audit script error
1
inconsistent ontology term
Audit category:
1
inconsistent assembly
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
22 results
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Hi-C
tissue
gastrocnemius medialis
4
psoas muscle
2
aorta
1
heart
1
heart left ventricle
1
+ See 4 more…
primary cell
endothelial cell of umbilical vein
2
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
endothelial cell of hepatic sinusoid
1
cell line
EndoC_BH1
1
HepG2
1
Panc1
1
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