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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1633
ChIP-seq
1397
total RNA-seq
489
ATAC-seq
361
single cell RNA-seq
211
DNase-seq
87
RNA microarray
84
snATAC-seq
75
WGBS
52
pCHi-C
30
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
GRO-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
22
DNA methylation
Date released
15
July, 2019
6
August, 2017
1
May, 2021
Available data
19
bed bedMethyl
19
bigBed bedMethyl
4
fastq
Organism
22
Homo sapiens
Biosample type
11
primary cell
11
tissue
Organ
6
epithelium
5
musculature of body
4
kidney
2
brain
2
heart
2
liver
2
pancreas
1
connective tissue
1
eye
1
pericardium
1
vasculature
Project
22
AMP
Genome assembly (visualization)
19
hg19
Lab
22
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
22 results
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RRBS
DNAme array
primary cell
cardiac fibroblast
1
cardiac muscle cell
1
choroid plexus epithelial cell
1
epithelial cell of proximal tubule
1
hepatocyte
1
+ See 6 more…
tissue
skeletal muscle tissue
4
brain
1
heart left ventricle
1
islet of Langerhans
1
kidney
1
+ See 3 more…
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