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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1633
ChIP-seq
1397
total RNA-seq
489
ATAC-seq
361
single cell RNA-seq
211
DNase-seq
87
RNA microarray
84
snATAC-seq
75
WGBS
52
pCHi-C
30
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
GRO-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
75
DNA methylation
30
3D chromatin structure
Date released
41
May, 2022
20
July, 2019
9
August, 2017
8
March, 2020
7
November, 2018
6
February, 2021
3
August, 2021
3
October, 2019
3
October, 2022
2
November, 2019
1
December, 2018
1
March, 2019
1
March, 2023
Available data
41
zippedFastqFolder
22
bigWig
19
hic
18
bam
18
fastq
17
bed bedMethyl
17
bigBed bedMethyl
16
bedpe bed3+
6
tsv
5
bed bed3+
5
hdf5
3
cool
1
bedpe
Organism
105
Homo sapiens
Biosample type
57
primary cell
43
tissue
5
cell line
in vitro differentiated cells
Organ
60
pancreas
55
epithelium
11
heart
9
liver
7
blood vessel
7
connective tissue
7
musculature of body
7
vasculature
6
adipose tissue
5
limb
3
brain
2
spleen
2
vein
1
kidney
Project
54
AMP
50
HPAP
1
ITG
Genome assembly (visualization)
23
hg19
19
GRCh38
Lab
50
AMP-T2D consortium
50
Klaus Kaestner, Upenn
3
Bing Ren, UCSD
1
ITG
1
Katalin Susztak, Upenn
Audit category:
4
audit script error
1
inconsistent ontology term
Audit category:
1
inconsistent assembly
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
105 results
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WGBS
Hi-C
primary cell
pancreatic alpha cell
31
1
pancreatic beta cell
16
1
endothelial cell of umbilical vein
2
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
+ See 4 more…
tissue
heart left ventricle
4
1
gastrocnemius medialis
4
liver
3
1
adipose tissue
3
aorta
2
1
+ See 12 more…
cell line
HepG2
1
2
EndoC_BH1
1
Panc1
1
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