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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
16
Hi-C
0
WGBS
Assay category
16
3D chromatin structure
Date released
8
March, 2020
3
October, 2022
2
August, 2021
2
November, 2019
1
October, 2019
Available data
41
zippedFastqFolder
22
bigWig
19
hic
18
bam
18
fastq
17
bed bedMethyl
17
bigBed bedMethyl
16
bedpe bed3+
6
tsv
5
bed bed3+
5
hdf5
3
cool
1
bedpe
Organism
16
Homo sapiens
Biosample type
10
tissue
in vitro differentiated cells
4
primary cell
2
cell line
Organ
7
pancreas
5
epithelium
3
heart
2
blood vessel
2
liver
2
musculature of body
2
vasculature
1
vein
Project
13
AMP
3
HPAP
Genome assembly (visualization)
15
hg19
Lab
11
AMP-T2D consortium
3
Klaus Kaestner, Upenn
2
Bing Ren, UCSD
Audit category:
3
audit script error
1
inconsistent ontology term
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
16 results
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Hi-C
tissue
islet of Langerhans
2
psoas muscle
2
aorta
1
heart
1
heart left ventricle
1
+ See 3 more…
primary cell
endothelial cell of umbilical vein
1
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
cell line
EndoC_BH1
1
HepG2
1
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