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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1673
ChIP-seq
1397
total RNA-seq
489
ATAC-seq
361
single cell RNA-seq
211
DNase-seq
87
RNA microarray
84
snATAC-seq
75
WGBS
52
pCHi-C
30
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
GRO-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
84
DNA accessibility
Date released
111
February, 2021
22
May, 2022
16
January, 2021
10
April, 2020
7
August, 2021
2
December, 2019
2
February, 2023
1
August, 2022
Available data
85
txt
27
fastq
21
zippedFastqFolder
2
tsv
1
bed bed3+
Organism
169
Homo sapiens
Biosample type
115
tissue
56
primary cell
Organ
84
bone element
11
pancreas
10
lung
8
blood
8
bodily fluid
8
kidney
1
adipose tissue
1
connective tissue
1
epithelium
1
musculature of body
Project
95
AMP
48
HPAP
18
T1D
10
LungMap
Genome assembly (visualization)
1
hg19
Lab
89
AMP-T2D consortium
48
Klaus Kaestner, Upenn
18
Kyle Gaulton, UCSD
10
Xin Sun, UCSD
6
Katalin Susztak, Upenn
Audit category:
84
inconsistent ontology term
31
audit script error
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
171 results
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RNA microarray
snATAC-seq
tissue
bone element
84
lung
10
islet of Langerhans
7
kidney
6
pancreas
4
+ See 4 more…
primary cell
Langerhans cell
48
peripheral blood mononuclear cell
8
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