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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
105
total RNA-seq
88
ChIP-seq
18
snATAC-seq
17
pCHi-C
11
ATAC-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
88
DNA binding
18
DNA accessibility
Target of assay
88
histone
88
histone modification
44
broad histone mark
44
narrow histone mark
Date released
85
May, 2021
16
January, 2021
3
March, 2020
2
February, 2023
Available data
88
bam
88
bed narrowPeak
88
bigWig
84
tagAlign
Organism
106
Homo sapiens
Biosample type
92
primary cell
12
tissue
2
cell line
Organ
14
pancreas
8
blood
8
bodily fluid
2
epithelium
Project
1593
AMP
106
T1D
48
HPAP
10
LungMap
Genome assembly (visualization)
88
GRCh38
88
hg19
Lab
102
Kyle Gaulton, UCSD
4
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
106 results
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ChIP-seq
snATAC-seq
primary cell
monocyte
84
peripheral blood mononuclear cell
8
tissue
islet of Langerhans
2
6
pancreas
4
cell line
EndoC_BH1
2
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