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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
737
ChIP-seq
228
total RNA-seq
128
single cell RNA-seq
61
ATAC-seq
27
snATAC-seq
17
WGBS
11
DNase-seq
4
RRBS
2
FAIRE-seq
1
GRO-seq
1
Hi-C
Assay category
88
DNA accessibility
Date released
27
February, 2021
18
May, 2022
14
September, 2018
8
October, 2017
7
August, 2020
5
August, 2017
5
September, 2017
3
September, 2020
1
March, 2019
Available data
257
bed narrowPeak
158
bam
124
bigWig
88
fastq
64
xls
60
zippedFastqFolder
25
bigBed narrowPeak
14
tsv
7
bed bed3
2
bed broadPeak
1
bed bed3+
1
txt
Organism
88
Homo sapiens
Biosample type
59
primary cell
29
tissue
Organ
56
pancreas
32
epithelium
2
adipose tissue
2
connective tissue
1
brain
1
liver
1
spleen
Project
51
AMP
37
HPAP
Genome assembly (visualization)
49
hg19
42
GRCh38
Lab
37
Klaus Kaestner, Upenn
31
AMP-T2D consortium
18
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
27
audit script error
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
88 results
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ATAC-seq
snATAC-seq
primary cell
Langerhans cell
27
pancreatic alpha cell
13
pancreatic beta cell
10
pancreatic acinar cell
5
pancreatic ductal cell
4
tissue
islet of Langerhans
20
body of pancreas
4
cerebellum (Hemisphere)
1
omental fat pad
1
right lobe of liver
1
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