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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1633
ChIP-seq
1397
total RNA-seq
489
ATAC-seq
361
single cell RNA-seq
211
DNase-seq
87
RNA microarray
84
snATAC-seq
75
WGBS
52
pCHi-C
30
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
GRO-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
1397
Transcription
5
DNA accessibility
Date released
523
February, 2021
190
May, 2020
120
July, 2018
98
May, 2021
90
August, 2017
89
February, 2023
67
August, 2021
46
July, 2019
29
October, 2019
26
May, 2022
26
September, 2018
25
February, 2020
20
November, 2019
16
September, 2020
13
March, 2020
6
April, 2018
5
December, 2019
5
January, 2019
4
November, 2020
2
October, 2018
1
May, 2023
1
November, 2018
Available data
1194
tsv
1166
bam
1162
bigWig
230
fastq
59
txt
5
bed narrowPeak
5
bigBed narrowPeak
2
bed bed3+
1
tar
Organism
1402
Homo sapiens
Biosample type
1041
tissue
248
primary cell
in vitro differentiated cells
113
cell line
Organ
465
connective tissue
405
pancreas
398
adipose tissue
189
liver
130
epithelium
71
heart
62
blood vessel
62
bone element
62
vasculature
61
kidney
56
artery
19
eye
18
brain
8
embryo
7
limb
6
musculature of body
5
nerve
4
skeleton
1
pericardium
1
spinal cord
1
vein
Project
1205
AMP
105
T1D
92
HPAP
Genome assembly (visualization)
1163
hg19
1156
GRCh38
Lab
1121
AMP-T2D consortium
110
Kyle Gaulton, UCSD
92
Klaus Kaestner, Upenn
49
Katalin Susztak, Upenn
20
Karen Mohlke, UNC
10
Bing Ren, UCSD
Audit category:
41
inconsistent ontology term
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
1402 results
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Clear Filters
total RNA-seq
FAIRE-seq
tissue
adipose tissue
382
islet of Langerhans
298
1
liver
167
bone tissue
58
kidney
49
1
+ See 47 more…
primary cell
monocyte
54
pancreatic alpha cell
52
exocrine cell
39
pancreatic beta cell
21
hepatocyte
5
+ See 46 more…
cell line
smooth muscle cell of the coronary artery
52
EndoC_BH1
33
HepG2
14
H1-hESC
8
early embryonic cell
2
+ See 4 more…
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