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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
29
snATAC-seq
5
single cell RNA-seq
4
Hi-C
2
RNA microarray
1
ATAC-seq
Assay category
30
DNA accessibility
5
Transcription
4
3D chromatin structure
Date released
33
February, 2021
3
October, 2022
2
December, 2019
1
August, 2022
1
May, 2022
1
October, 2019
Available data
27
fastq
7
tsv
6
txt
5
csv
4
hic
3
bedpe bed3+
3
cool
1
bam
1
bed bed3
1
bed bed3+
1
bed narrowPeak
Organism
41
Homo sapiens
Biosample type
31
primary cell
9
tissue
in vitro differentiated cells
1
cell line
Organ
7
kidney
5
epithelium
4
pancreas
1
blood vessel
1
liver
1
musculature of body
1
vasculature
1
vein
Project
30
HPAP
11
AMP
Genome assembly (visualization)
6
hg19
1
GRCh38
Lab
30
Klaus Kaestner, Upenn
11
AMP-T2D consortium
Audit category:
238
inconsistent ontology term
40
audit script error
28
inconsistent control
1
inconsistent replicate
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
41 results
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snATAC-seq
single cell RNA-seq
Hi-C
RNA microarray
ATAC-seq
primary cell
Langerhans cell
27
endothelial cell of umbilical vein
1
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
tissue
kidney
5
islet of Langerhans
1
kidney interstitium
1
renal glomerulus
1
skeletal muscle tissue
1
cell line
HepG2
1
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