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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
195
ChIP-seq
89
total RNA-seq
9
WGBS
6
RRBS
5
ATAC-seq
4
DNase-seq
1
FAIRE-seq
Assay category
195
DNA binding
89
Transcription
15
DNA methylation
10
DNA accessibility
Target of assay
146
histone modification
145
histone
84
broad histone mark
61
narrow histone mark
42
control
7
transcription factor
3
RNA binding protein
1
chromatin remodeller
Date released
689
February, 2021
396
November, 2017
341
May, 2020
309
August, 2017
306
October, 2019
277
August, 2021
267
May, 2021
218
June, 2019
200
May, 2022
189
February, 2023
168
July, 2018
120
May, 2019
108
July, 2019
85
November, 2018
80
April, 2019
76
October, 2018
59
September, 2020
56
March, 2020
56
November, 2019
51
December, 2017
49
April, 2018
47
September, 2023
41
September, 2018
35
December, 2018
30
January, 2019
25
February, 2020
19
April, 2020
19
October, 2017
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
8
December, 2019
7
August, 2020
5
March, 2019
5
March, 2023
4
January, 2018
4
October, 2022
3
August, 2018
3
June, 2018
1
August, 2022
Available data
199
fastq
194
bam
190
bigWig
98
bed narrowPeak
89
tsv
71
tagAlign
41
bigBed narrowPeak
40
bed broadPeak
14
bigBed broadPeak
12
bed bed3+
6
bed bedMethyl
6
bigBed bedMethyl
Organism
302
Homo sapiens
Biosample type
262
tissue
in vitro differentiated cells
47
primary cell
Organ
166
pancreas
54
liver
45
adipose tissue
45
connective tissue
29
epithelium
26
musculature of body
Project
309
AMP
Genome assembly (visualization)
193
hg19
166
GRCh38
Lab
309
AMP-T2D consortium
Audit category:
missing controlled_by
Audit category:
10
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
biosample_type!
in vitro differentiated cells
audit.NOT_COMPLIANT.category!
missing controlled_by
BIOSAMPLE
ASSAY
309 results
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Clear Filters
ChIP-seq
total RNA-seq
WGBS
RRBS
ATAC-seq
DNase-seq
FAIRE-seq
tissue
islet of Langerhans
32
89
1
1
liver
48
3
1
subcutaneous abdominal adipose tissue
36
3
skeletal muscle tissue
22
4
pancreas
14
+ See 3 more…
primary cell
skeletal muscle myoblast
15
1
2
pancreatic alpha cell
13
1
pancreatic beta cell
13
1
pancreatic acinar cell
1
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