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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1634
ChIP-seq
1391
total RNA-seq
489
ATAC-seq
318
single cell RNA-seq
211
DNase-seq
87
RNA microarray
84
snATAC-seq
75
WGBS
52
pCHi-C
30
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
GRO-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
318
Transcription
Target of assay
3
control
Date released
106
August, 2021
April, 2018
48
July, 2018
47
September, 2023
40
September, 2020
34
May, 2022
18
February, 2021
9
April, 2020
3
August, 2018
3
July, 2019
3
June, 2018
3
May, 2023
1
December, 2019
1
February, 2023
1
November, 2018
1
September, 2018
Available data
160
tsv
90
fastq
57
bam
57
bigWig
52
zippedFastqFolder
13
txt
8
csv
Organism
318
Homo sapiens
Biosample type
174
tissue
144
primary cell
in vitro differentiated cells
Organ
93
heart
64
kidney
41
pancreas
37
epithelium
9
lung
6
blood vessel
6
vasculature
3
brain
2
artery
2
connective tissue
1
liver
1
musculature of body
Project
177
AMP
85
HPAP
47
KPMP
9
LungMap
Genome assembly (visualization)
57
GRCh38
57
hg19
Lab
166
AMP-T2D consortium
85
Klaus Kaestner, Upenn
47
KPMP
11
Katalin Susztak, Upenn
9
Xin Sun, UCSD
Audit category:
7
inconsistent ontology term
5
audit script error
biosample_type!
in vitro differentiated cells
audit.WARNING.category!
inconsistent control read length
month_released!
April, 2018
BIOSAMPLE
ASSAY
318 results
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single cell RNA-seq
tissue
kidney
64
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 13 more…
primary cell
Langerhans cell
85
pancreatic alpha cell
9
pancreatic beta cell
9
pancreatic acinar cell
6
pancreatic cell
6
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