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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
289
ATAC-seq
180
DNase-seq
28
snATAC-seq
4
FAIRE-seq
Assay category
1354
DNA binding
1344
Transcription
501
DNA accessibility
39
DNA methylation
20
3D chromatin structure
1
DNA sequencing
Date released
163
June, 2019
81
February, 2023
70
August, 2021
39
May, 2022
22
October, 2019
21
November, 2019
17
February, 2021
16
May, 2021
11
May, 2023
10
April, 2020
10
November, 2018
8
January, 2021
8
July, 2019
8
October, 2017
5
August, 2017
4
March, 2019
4
March, 2020
3
January, 2018
1
August, 2022
Available data
401
bed narrowPeak
257
bam
229
bigWig
186
bigBed narrowPeak
179
bed broadPeak
178
bed bed3+
177
bigBed broadPeak
64
xls
41
fastq
6
bed bed3
2
tsv
1
txt
Organism
500
Homo sapiens
Biosample type
470
tissue
primary cell
in vitro differentiated cells
31
cell line
Organ
151
kidney
102
pancreas
74
heart
51
blood vessel
51
vasculature
49
artery
44
limb
34
musculature of body
32
brain
32
epithelium
31
eye
26
liver
18
ureter
12
bone element
12
skeleton
10
lung
8
adipose tissue
8
connective tissue
3
nerve
2
spleen
1
blood
1
bodily fluid
1
pituitary gland
1
skin of body
Project
470
AMP
21
T1D
10
LungMap
Genome assembly (visualization)
347
GRCh38
303
hg19
Lab
346
AMP-T2D consortium
81
Katalin Susztak, Upenn
39
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
10
Xin Sun, UCSD
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
21
inconsistent ontology term
2
audit script error
1
inconsistent replicate
biosample_type!
in vitro differentiated cells
primary cell
BIOSAMPLE
ASSAY
501 results
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Clear Filters
ATAC-seq
DNase-seq
snATAC-seq
FAIRE-seq
tissue
kidney
75
13
6
1
islet of Langerhans
68
1
7
1
coronary artery
36
2
liver
20
2
heart
18
+ See 60 more…
cell line
EndoC_BH1
19
smooth muscle cell of the coronary artery
8
GM12878
1
HepG2
1
Panc1
1
+ See 1 more…
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