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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
32
ChIP-seq
Assay category
32
DNA binding
Target of assay
633
histone modification
632
histone
450
transcription factor
329
narrow histone mark
303
broad histone mark
271
control
89
recombinant protein
88
RNA binding protein
32
chromatin remodeller
5
nucleotide modification
5
other context
5
other post-translational modification
Date released
15
November, 2017
7
November, 2018
6
January, 2019
2
December, 2017
2
December, 2018
Available data
32
bam
32
bed narrowPeak
32
bigBed narrowPeak
32
bigWig
32
fastq
4
bed broadPeak
4
bigBed broadPeak
Organism
32
Homo sapiens
Biosample type
30
cell line
in vitro differentiated cells
2
tissue
primary cell
Organ
22
liver
10
blood
10
bodily fluid
Project
32
AMP
Genome assembly (visualization)
32
hg19
30
GRCh38
Lab
32
AMP-T2D consortium
Audit category:
3
inconsistent control
Audit category:
6
missing controlled_by
Audit category:
11
inconsistent control read length
8
inconsistent control run_type
biosample_type!
in vitro differentiated cells
primary cell
BIOSAMPLE
ASSAY
32 results
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ChIP-seq
cell line
HepG2
20
GM12878
10
tissue
liver
2
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