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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
371
ChIP-seq
Assay category
371
DNA binding
Target of assay
371
transcription factor
277
histone
277
histone modification
142
broad histone mark
135
narrow histone mark
119
control
89
recombinant protein
75
RNA binding protein
31
chromatin remodeller
3
nucleotide modification
2
other context
2
other post-translational modification
Date released
244
November, 2017
57
November, 2018
25
December, 2018
14
January, 2019
11
August, 2021
7
October, 2019
5
February, 2021
4
June, 2019
2
August, 2017
1
May, 2019
1
November, 2019
Available data
366
bigWig
362
bed narrowPeak
359
bam
342
fastq
338
bigBed narrowPeak
49
bed broadPeak
49
bigBed broadPeak
5
tagAlign
3
tar
Organism
371
Homo sapiens
Biosample type
361
cell line
tissue
in vitro differentiated cells
10
primary cell
Organ
297
liver
51
blood
51
bodily fluid
9
kidney
6
epithelium
6
vasculature
5
blood vessel
5
heart
4
artery
3
brain
1
connective tissue
1
eye
1
pancreas
Project
371
AMP
Genome assembly (visualization)
362
hg19
318
GRCh38
Lab
360
AMP-T2D consortium
11
Bing Ren, UCSD
Audit category:
11
inconsistent ontology term
1
inconsistent control
Audit category:
12
missing controlled_by
Audit category:
15
inconsistent control read length
8
inconsistent control run_type
biosample_type!
in vitro differentiated cells
tissue
BIOSAMPLE
ASSAY
371 results
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Clear Filters
ChIP-seq
cell line
HepG2
297
GM12878
51
smooth muscle cell of the coronary artery
4
RCC 7860 HIF1a re-expression
3
RCC 7860 HIF2a over-expression
2
+ See 3 more…
primary cell
skeletal muscle myoblast
2
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
cardiac fibroblast
1
cardiac muscle cell
1
+ See 4 more…
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