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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
64
ATAC-seq
49
total RNA-seq
22
ChIP-seq
8
single cell RNA-seq
6
snATAC-seq
5
STARR-seq
3
Hi-C
2
Capture-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
70
DNA accessibility
57
Transcription
22
DNA binding
3
3D chromatin structure
1
DNA sequencing
Target of assay
11
transcription factor
6
histone
6
histone modification
5
control
4
narrow histone mark
2
broad histone mark
1
RNA binding protein
Date released
406
November, 2017
292
October, 2019
254
August, 2017
218
June, 2019
200
May, 2022
173
February, 2023
173
May, 2021
161
August, 2021
152
February, 2021
152
May, 2020
120
May, 2019
88
November, 2018
80
April, 2019
74
October, 2018
59
September, 2020
51
December, 2017
47
September, 2018
47
September, 2023
43
July, 2019
36
November, 2019
35
December, 2018
25
January, 2019
23
October, 2017
19
April, 2020
16
January, 2021
15
March, 2020
15
May, 2023
12
November, 2020
11
September, 2017
7
August, 2020
5
March, 2019
5
March, 2023
4
January, 2018
4
July, 2018
4
October, 2022
1
August, 2022
1
December, 2019
Available data
tsv
81
bed narrowPeak
64
xls
57
txt
25
bigWig
12
bam
4
tagAlign
3
bed bed3+
2
bedpe bed3+
2
hic
1
vcf
Organism
160
Homo sapiens
Biosample type
130
tissue
in vitro differentiated cells
27
cell line
4
primary cell
Organ
130
kidney
26
liver
6
epithelium
3
pancreas
1
adipose tissue
1
connective tissue
Project
161
AMP
Genome assembly (visualization)
67
GRCh38
19
hg19
Lab
128
Katalin Susztak, Upenn
26
Bing Ren, UCSD
7
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
biosample_type!
in vitro differentiated cells
files.file_type!
tsv
BIOSAMPLE
ASSAY
161 results
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Clear Filters
ATAC-seq
total RNA-seq
ChIP-seq
single cell RNA-seq
snATAC-seq
STARR-seq
Hi-C
Capture-C
RNA microarray
whole genome sequencing assay
tissue
kidney
64
49
8
6
1
islet of Langerhans
1
subcutaneous adipose tissue
1
cell line
HepG2
18
2
1
1
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
primary cell
hepatocyte
4
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