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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1186
ChIP-seq
1158
total RNA-seq
219
ATAC-seq
185
DNase-seq
100
single cell RNA-seq
23
Hi-C
19
RRBS
18
small RNA-seq
5
FAIRE-seq
2
pCHi-C
Assay category
219
DNA accessibility
Date released
45
May, 2020
38
May, 2022
33
February, 2023
21
November, 2019
18
February, 2021
14
September, 2018
13
May, 2021
7
October, 2017
5
August, 2017
5
July, 2019
5
October, 2019
5
September, 2017
4
March, 2020
3
January, 2018
2
March, 2019
1
November, 2020
Available data
158
bed narrowPeak
155
bam
112
bigWig
49
fastq
25
bigBed narrowPeak
7
bed bed3
2
tsv
1
bed broadPeak
Organism
219
Homo sapiens
Biosample type
122
tissue
84
primary cell
in vitro differentiated cells
13
cell line
Organ
71
pancreas
38
epithelium
27
eye
23
liver
12
bone element
12
heart
12
skeleton
11
blood vessel
11
vasculature
10
artery
8
connective tissue
8
limb
6
adipose tissue
1
blood
1
bodily fluid
1
brain
1
musculature of body
1
nerve
1
spleen
Project
219
AMP
Genome assembly (visualization)
219
hg19
217
GRCh38
Lab
178
AMP-T2D consortium
20
Karen Mohlke, UNC
18
Kyle Gaulton, UCSD
1
Bing Ren, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
10
inconsistent ontology term
1
inconsistent replicate
biosample_type!
in vitro differentiated cells
files.file_type!
txt
BIOSAMPLE
ASSAY
219 results
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Clear Filters
ATAC-seq
tissue
islet of Langerhans
42
liver
20
retina
15
pigmented layer of retina
12
body of pancreas
4
+ See 26 more…
primary cell
monocyte
15
pancreatic beta cell
7
pancreatic alpha cell
6
pancreatic acinar cell
5
pancreatic ductal cell
4
+ See 27 more…
cell line
smooth muscle cell of the coronary artery
8
EndoC_BH1
3
GM12878
1
HepG2
1
See all biosamples
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