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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
65
ChIP-seq
9
DNase-seq
7
WGBS
1
FAIRE-seq
1
single cell RNA-seq
Assay category
65
DNA binding
10
DNA accessibility
7
DNA methylation
1
Transcription
Target of assay
59
transcription factor
20
RNA binding protein
16
recombinant protein
6
control
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
600
February, 2021
385
November, 2017
341
May, 2020
333
August, 2017
306
October, 2019
267
May, 2021
220
August, 2021
218
June, 2019
193
May, 2022
185
February, 2023
168
July, 2018
120
May, 2019
108
July, 2019
83
November, 2018
80
April, 2019
75
October, 2018
73
September, 2018
59
September, 2020
56
March, 2020
56
November, 2019
49
April, 2018
49
December, 2017
47
September, 2023
40
May, 2024
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
8
December, 2019
7
August, 2020
5
March, 2019
5
March, 2023
4
January, 2018
3
August, 2018
3
June, 2018
3
October, 2022
1
August, 2022
Available data
83
fastq
82
bam
75
bigWig
68
bed narrowPeak
68
bigBed narrowPeak
9
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
1
csv
Organism
83
Homo sapiens
Biosample type
56
cell line
26
tissue
1
primary cell
Organ
48
liver
15
blood
15
bodily fluid
9
spleen
7
pancreas
2
brain
1
adipose tissue
1
connective tissue
Project
83
AMP
Genome assembly (visualization)
74
GRCh38
66
hg19
Lab
83
AMP-T2D consortium
Audit category:
1
missing controlled_by
Audit category:
inconsistent control read length
4
inconsistent control run_type
biosample_type!
in vitro differentiated cells
files.file_type!
txt
audit.WARNING.category!
inconsistent control read length
BIOSAMPLE
ASSAY
83 results
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ChIP-seq
DNase-seq
WGBS
FAIRE-seq
single cell RNA-seq
cell line
HepG2
40
1
GM12878
15
tissue
spleen
6
1
2
liver
4
2
body of pancreas
2
2
pancreas
2
1
brain
2
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primary cell
pancreatic cell
1
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