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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
66
ChIP-seq
36
DNase-seq
15
total RNA-seq
8
ATAC-seq
4
Hi-C
1
WGBS
Assay category
66
DNA binding
44
DNA accessibility
15
Transcription
4
3D chromatin structure
1
DNA methylation
Target of assay
49
histone
49
histone modification
34
broad histone mark
17
control
15
narrow histone mark
Date released
69
October, 2019
32
June, 2019
8
August, 2021
7
May, 2019
6
February, 2021
5
July, 2019
3
February, 2020
Available data
122
bam
99
bigWig
92
bed narrowPeak
84
bigBed narrowPeak
36
bed bed3+
36
bed broadPeak
36
bigBed broadPeak
15
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
130
Homo sapiens
Biosample type
122
tissue
in vitro differentiated cells
8
cell line
Organ
937
pancreas
776
liver
587
connective tissue
500
epithelium
490
adipose tissue
392
heart
292
kidney
286
brain
236
vasculature
230
blood vessel
141
artery
122
limb
95
musculature of body
71
bone element
69
blood
69
bodily fluid
61
eye
43
nerve
25
spleen
22
vein
20
lung
18
ureter
12
skeleton
8
embryo
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
130
AMP
Genome assembly (visualization)
104
GRCh38
104
hg19
Lab
130
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
biosample_type!
in vitro differentiated cells
files.file_type!
txt
BIOSAMPLE
ASSAY
130 results
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ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
Hi-C
WGBS
tissue
tibial nerve
35
2
5
1
tibial artery
23
2
1
1
muscle of leg
7
13
1
muscle of arm
17
gastrocnemius medialis
1
4
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cell line
H1-hESC
8
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