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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
173
DNase-seq
99
ChIP-seq
2
ATAC-seq
Assay category
175
DNA accessibility
99
DNA binding
Target of assay
53
histone
53
histone modification
46
transcription factor
32
broad histone mark
21
narrow histone mark
6
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
157
June, 2019
58
November, 2017
40
August, 2017
9
October, 2019
7
November, 2018
1
March, 2019
1
November, 2020
1
October, 2017
Available data
2858
bam
2648
bigWig
1443
tsv
1442
bed narrowPeak
1196
fastq
898
bigBed narrowPeak
274
bed broadPeak
246
bigBed broadPeak
240
tagAlign
213
bed bed3+
158
txt
153
zippedFastqFolder
64
xls
34
bed bedMethyl
34
bigBed bedMethyl
19
hic
16
bedpe bed3+
8
csv
6
bed bed3
4
tar
3
cool
2
hdf5
1
bedpe
1
vcf
Organism
268
Homo sapiens
Biosample type
177
tissue
59
cell line
38
primary cell
in vitro differentiated cells
Organ
78
kidney
63
liver
brain
46
musculature of body
36
limb
30
heart
22
epithelium
21
pancreas
18
ureter
17
vasculature
13
blood vessel
9
connective tissue
4
artery
4
eye
4
vein
3
adipose tissue
2
nerve
1
spleen
Project
274
AMP
Genome assembly (visualization)
260
hg19
235
GRCh38
Lab
272
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
4
inconsistent ontology term
Audit category:
13
inconsistent control read length
2
inconsistent assembly
biosample_type!
in vitro differentiated cells
organ_slims!
brain
BIOSAMPLE
ASSAY
274 results
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DNase-seq
ChIP-seq
ATAC-seq
tissue
heart
18
muscle of arm
17
kidney
13
muscle of leg
13
skeletal muscle tissue
13
+ See 29 more…
cell line
HepG2
58
Panc1
1
primary cell
skeletal muscle myoblast
1
13
endothelial cell of umbilical vein
2
2
cardiac fibroblast
3
glomerular visceral epithelial cell
2
kidney tubule cell
2
+ See 13 more…
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