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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
99
ATAC-seq
56
ChIP-seq
23
DNase-seq
Assay category
122
DNA accessibility
56
DNA binding
Target of assay
52
histone
52
histone modification
36
broad histone mark
16
narrow histone mark
4
transcription factor
3
recombinant protein
1
RNA binding protein
Date released
64
August, 2021
54
November, 2017
35
February, 2023
23
June, 2019
2
November, 2018
Available data
367
bam
327
fastq
194
tsv
178
bed narrowPeak
157
txt
153
zippedFastqFolder
137
tagAlign
108
bigWig
79
bigBed narrowPeak
64
xls
24
bed broadPeak
23
bed bed3+
23
bigBed broadPeak
17
bed bedMethyl
17
bigBed bedMethyl
8
csv
1
bedpe bed3+
1
hic
1
vcf
Organism
178
Homo sapiens
Biosample type
167
tissue
7
primary cell
4
cell line
in vitro differentiated cells
Organ
71
kidney
62
brain
38
heart
36
blood vessel
36
vasculature
35
artery
6
epithelium
4
liver
2
pancreas
1
connective tissue
Project
178
AMP
Genome assembly (visualization)
hg19
1464
GRCh38
Lab
114
AMP-T2D consortium
64
Katalin Susztak, Upenn
biosample_type!
in vitro differentiated cells
assembly!
hg19
BIOSAMPLE
ASSAY
178 results
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ATAC-seq
ChIP-seq
DNase-seq
tissue
kidney
64
coronary artery
35
layer of hippocampus
16
caudate nucleus
11
1
substantia nigra
10
+ See 16 more…
primary cell
glomerular visceral epithelial cell
2
kidney tubule cell
2
cardiac fibroblast
1
kidney capillary endothelial cell
1
kidney glomerular epithelial cell
1
cell line
HepG2
4
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