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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
783
ChIP-seq
247
ATAC-seq
206
DNase-seq
5
FAIRE-seq
Assay category
783
DNA binding
458
DNA accessibility
Target of assay
703
histone modification
702
histone
356
narrow histone mark
346
broad histone mark
80
transcription factor
31
RNA binding protein
3
chromatin remodeller
3
other context
3
other post-translational modification
Date released
210
June, 2019
172
October, 2019
127
May, 2021
99
August, 2017
97
May, 2019
67
August, 2021
65
April, 2019
64
November, 2017
63
February, 2023
46
September, 2018
45
October, 2018
38
December, 2017
38
May, 2022
27
May, 2020
20
November, 2019
17
November, 2018
12
October, 2017
9
February, 2021
7
July, 2019
6
January, 2019
5
September, 2017
3
December, 2018
2
March, 2020
2
November, 2020
Available data
2519
bam
2348
bigWig
1350
tsv
1241
bed narrowPeak
790
fastq
670
bigBed narrowPeak
338
tagAlign
262
bed broadPeak
245
bed bed3+
225
bigBed broadPeak
157
txt
153
zippedFastqFolder
64
xls
35
bed bedMethyl
35
bigBed bedMethyl
17
hic
14
bedpe bed3+
8
csv
6
bed bed3
4
hdf5
3
cool
1
bedpe
1
tagAlign bed3+
1
tar
Organism
1235
Homo sapiens
Biosample type
944
tissue
cell line
295
primary cell
in vitro differentiated cells
2
stem cell
Organ
203
brain
191
pancreas
175
kidney
139
heart
121
vasculature
119
liver
118
epithelium
117
blood vessel
92
limb
62
artery
60
musculature of body
33
eye
30
connective tissue
27
nerve
18
ureter
14
spleen
13
adipose tissue
13
vein
8
bone element
8
skeleton
1
pituitary gland
Project
1155
AMP
86
T1D
Genome assembly (visualization)
1106
GRCh38
1067
hg19
Lab
1025
AMP-T2D consortium
132
Kyle Gaulton, UCSD
64
Katalin Susztak, Upenn
20
Karen Mohlke, UNC
Audit category:
29
inconsistent ontology term
27
inconsistent control
Audit category:
36
missing controlled_by
Audit category:
13
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
biosample_type!
in vitro differentiated cells
cell line
BIOSAMPLE
ASSAY
1241 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
FAIRE-seq
tissue
liver
82
20
2
kidney
20
64
13
1
islet of Langerhans
20
37
1
1
coronary artery
3
36
2
body of pancreas
26
4
4
+ See 131 more…
primary cell
monocyte
84
13
CD8-positive, alpha-beta T cell
30
pancreatic ductal cell
13
4
skeletal muscle myoblast
14
2
pancreatic beta cell
7
7
+ See 29 more…
stem cell
hESC
2
See all biosamples
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