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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
338
ChIP-seq
5
DNase-seq
1
ATAC-seq
Assay category
338
DNA binding
6
DNA accessibility
Target of assay
312
transcription factor
81
recombinant protein
53
RNA binding protein
23
histone
23
histone modification
22
chromatin remodeller
14
broad histone mark
9
narrow histone mark
2
other context
2
other post-translational modification
Date released
249
November, 2017
51
November, 2018
36
December, 2017
6
August, 2017
2
June, 2019
Available data
666
bam
608
bigWig
450
fastq
427
bed narrowPeak
344
bigBed narrowPeak
174
tsv
86
tagAlign
63
bed broadPeak
63
bigBed broadPeak
13
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
344
Homo sapiens
Biosample type
293
cell line
49
tissue
in vitro differentiated cells
2
primary cell
Organ
344
liver
127
brain
104
kidney
94
heart
91
pancreas
84
limb
83
vasculature
79
blood vessel
62
epithelium
54
blood
54
bodily fluid
47
musculature of body
26
nerve
25
artery
25
connective tissue
18
ureter
13
spleen
13
vein
10
adipose tissue
6
eye
Project
344
AMP
Genome assembly (visualization)
340
hg19
312
GRCh38
Lab
344
AMP-T2D consortium
Audit category:
27
inconsistent control
Audit category:
12
missing controlled_by
Audit category:
25
inconsistent control read length
8
inconsistent control run_type
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
344 results
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ChIP-seq
DNase-seq
ATAC-seq
cell line
HepG2
293
tissue
liver
38
2
right lobe of liver
7
1
1
primary cell
hepatic stellate cell
1
hepatocyte
1
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