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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
91
ChIP-seq
Assay category
91
DNA binding
Target of assay
403
transcription factor
379
histone
379
histone modification
235
broad histone mark
144
narrow histone mark
91
RNA binding protein
81
recombinant protein
33
chromatin remodeller
5
other context
5
other post-translational modification
Date released
35
November, 2017
21
November, 2018
11
October, 2018
6
January, 2019
5
May, 2019
4
June, 2019
3
April, 2019
2
August, 2017
2
December, 2017
2
December, 2018
Available data
97
bam
95
bigWig
94
bed narrowPeak
91
bigBed narrowPeak
83
fastq
9
bed broadPeak
9
bigBed broadPeak
2
bed bed3+
1
tar
Organism
91
Homo sapiens
Biosample type
61
cell line
20
tissue
10
primary cell
in vitro differentiated cells
Organ
53
liver
10
blood
10
bodily fluid
6
connective tissue
6
heart
6
pancreas
5
adipose tissue
5
epithelium
5
vasculature
4
blood vessel
3
brain
2
kidney
1
artery
1
eye
Project
91
AMP
Genome assembly (visualization)
90
hg19
86
GRCh38
Lab
91
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
6
inconsistent control read length
3
inconsistent control run_type
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
91 results
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Clear Filters
ChIP-seq
cell line
HepG2
51
GM12878
10
tissue
body of pancreas
5
heart left ventricle
3
omental fat pad
3
subcutaneous adipose tissue
2
ascending aorta
1
+ See 6 more…
primary cell
skeletal muscle myoblast
2
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
cardiac fibroblast
1
cardiac muscle cell
1
+ See 4 more…
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