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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
60
single cell RNA-seq
41
WGBS
39
ATAC-seq
21
snATAC-seq
1
Hi-C
Assay category
60
DNA accessibility
60
Transcription
41
DNA methylation
1
3D chromatin structure
Date released
134
May, 2022
19
September, 2020
6
February, 2021
1
March, 2019
1
November, 2018
1
September, 2018
Available data
3101
bam
2910
bigWig
1685
bed narrowPeak
1469
tsv
1217
fastq
1025
bigBed narrowPeak
358
tagAlign
321
bed broadPeak
284
bigBed broadPeak
248
bed bed3+
158
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
19
hic
16
bedpe bed3+
8
csv
7
bed bed3
5
hdf5
4
tar
3
cool
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
162
Homo sapiens
Biosample type
155
primary cell
7
tissue
Organ
81
pancreas
80
epithelium
5
kidney
1
liver
Project
153
HPAP
9
AMP
Genome assembly (visualization)
1
hg19
Lab
153
Klaus Kaestner, Upenn
8
AMP-T2D consortium
1
Bing Ren, UCSD
Audit category:
5
audit script error
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
162 results
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single cell RNA-seq
WGBS
ATAC-seq
snATAC-seq
Hi-C
primary cell
Langerhans cell
52
21
pancreatic alpha cell
25
22
pancreatic beta cell
16
13
pancreatic acinar cell
4
pancreatic cell
2
tissue
kidney
5
islet of Langerhans
1
liver
1
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