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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
59
total RNA-seq
15
single cell RNA-seq
1
MPRA
1
snATAC-seq
Assay category
74
Transcription
1
DNA accessibility
Date released
89
February, 2021
57
August, 2021
7
May, 2022
4
February, 2023
1
November, 2018
1
October, 2022
1
September, 2018
Available data
2435
bam
2302
bigWig
1295
tsv
1258
bed narrowPeak
767
fastq
681
bigBed narrowPeak
272
tagAlign
258
bed broadPeak
235
bed bed3+
221
bigBed broadPeak
158
txt
153
zippedFastqFolder
64
xls
33
bed bedMethyl
33
bigBed bedMethyl
17
hic
14
bedpe bed3+
7
csv
6
bed bed3
4
hdf5
3
cool
1
bedpe
1
tagAlign bed3+
1
tar
Organism
159
Homo sapiens
Biosample type
157
tissue
in vitro differentiated cells
2
primary cell
1
cell line
Organ
88
bone element
62
kidney
6
pancreas
4
skeleton
liver
1
musculature of body
Project
160
AMP
Genome assembly (visualization)
1
hg19
Lab
97
AMP-T2D consortium
57
Katalin Susztak, Upenn
6
Kyle Gaulton, UCSD
Audit category:
84
inconsistent ontology term
6
audit script error
biosample_type!
in vitro differentiated cells
organ_slims!
liver
BIOSAMPLE
ASSAY
160 results
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RNA microarray
total RNA-seq
single cell RNA-seq
MPRA
snATAC-seq
tissue
bone element
84
kidney
49
13
islet of Langerhans
6
acetabular part of hip bone
1
ilium
1
+ See 3 more…
primary cell
pancreatic cell
2
cell line
MIN6
1
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