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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
19
Hi-C
19
RRBS
17
WGBS
Assay category
36
DNA methylation
19
3D chromatin structure
Date released
23
July, 2019
8
March, 2020
7
November, 2018
6
August, 2017
3
October, 2022
2
August, 2021
2
November, 2019
2
October, 2019
1
March, 2019
1
March, 2023
Available data
3101
bam
2870
bigWig
1645
bed narrowPeak
1469
tsv
1217
fastq
1025
bigBed narrowPeak
358
tagAlign
321
bed broadPeak
284
bigBed broadPeak
248
bed bed3+
158
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
19
hic
16
bedpe bed3+
8
csv
7
bed bed3
5
hdf5
4
tar
3
cool
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
55
Homo sapiens
Biosample type
36
tissue
16
primary cell
in vitro differentiated cells
3
cell line
Organ
13
pancreas
12
epithelium
11
heart
6
musculature of body
5
kidney
5
liver
5
vasculature
4
blood vessel
3
connective tissue
2
adipose tissue
2
brain
2
spleen
2
vein
1
eye
1
limb
1
pericardium
Project
51
AMP
3
HPAP
1
ITG
Genome assembly (visualization)
37
hg19
18
GRCh38
Lab
48
AMP-T2D consortium
3
Klaus Kaestner, Upenn
2
Bing Ren, UCSD
1
ITG
1
Katalin Susztak, Upenn
Audit category:
4
audit script error
3
inconsistent ontology term
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
55 results
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Clear Filters
Hi-C
RRBS
WGBS
tissue
heart left ventricle
1
1
2
pancreas
1
1
2
heart right ventricle
1
2
islet of Langerhans
2
1
adipose tissue
2
+ See 12 more…
primary cell
endothelial cell of umbilical vein
2
cardiac fibroblast
1
cardiac muscle cell
1
chondrocytes
1
choroid plexus epithelial cell
1
+ See 10 more…
cell line
HepG2
1
1
EndoC_BH1
1
See all biosamples
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