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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
357
ChIP-seq
Assay category
357
DNA binding
Target of assay
294
histone
294
histone modification
161
narrow histone mark
133
broad histone mark
58
control
5
transcription factor
Date released
84
May, 2021
78
November, 2017
71
August, 2017
50
May, 2020
48
October, 2019
14
October, 2017
8
February, 2021
4
August, 2021
Available data
3100
bam
2869
bigWig
1644
bed narrowPeak
1469
tsv
1217
fastq
1025
bigBed narrowPeak
357
tagAlign
321
bed broadPeak
284
bigBed broadPeak
248
bed bed3+
158
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
19
hic
16
bedpe bed3+
8
csv
7
bed bed3
5
hdf5
4
tar
3
cool
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
350
Homo sapiens
Biosample type
237
tissue
100
primary cell
in vitro differentiated cells
20
cell line
Organ
118
brain
86
liver
16
pancreas
15
musculature of body
8
adipose tissue
8
connective tissue
6
artery
6
blood vessel
6
heart
6
vasculature
4
epithelium
pituitary gland
Project
273
AMP
84
T1D
Genome assembly (visualization)
227
GRCh38
220
hg19
Lab
273
AMP-T2D consortium
84
Kyle Gaulton, UCSD
Audit category:
4
missing controlled_by
Audit category:
11
inconsistent control read length
2
inconsistent assembly
biosample_type!
in vitro differentiated cells
organ_slims!
pituitary gland
BIOSAMPLE
ASSAY
357 results
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Clear Filters
ChIP-seq
tissue
liver
70
substantia nigra
16
caudate nucleus
15
layer of hippocampus
15
skeletal muscle tissue
15
+ See 42 more…
primary cell
monocyte
84
skeletal muscle myoblast
12
hepatocyte
4
cell line
HepG2
12
smooth muscle cell of the coronary artery
6
iPSC derived cell line
2
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