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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
225
ChIP-seq
Assay category
225
DNA binding
Target of assay
295
histone
295
histone modification
162
narrow histone mark
broad histone mark
58
control
5
transcription factor
Date released
50
May, 2020
49
October, 2019
40
May, 2021
37
November, 2017
34
August, 2017
8
February, 2021
4
October, 2017
3
August, 2021
Available data
2760
bam
2500
bigWig
1469
tsv
1282
bed narrowPeak
1130
fastq
790
bigBed narrowPeak
285
bed broadPeak
268
bigBed broadPeak
240
bed bed3+
225
tagAlign
158
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
19
hic
16
bedpe bed3+
8
csv
7
bed bed3
5
hdf5
4
tar
3
cool
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
222
Homo sapiens
Biosample type
162
tissue
49
primary cell
in vitro differentiated cells
14
cell line
Organ
73
brain
68
liver
8
pancreas
7
musculature of body
6
artery
6
blood vessel
6
heart
6
vasculature
4
adipose tissue
4
connective tissue
3
epithelium
1
pituitary gland
Project
185
AMP
40
T1D
Genome assembly (visualization)
141
hg19
132
GRCh38
Lab
185
AMP-T2D consortium
40
Kyle Gaulton, UCSD
Audit category:
1
missing controlled_by
Audit category:
5
inconsistent control read length
biosample_type!
in vitro differentiated cells
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
225 results
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Clear Filters
ChIP-seq
tissue
liver
59
substantia nigra
8
caudate nucleus
7
cingulate gyrus
7
layer of hippocampus
7
+ See 43 more…
primary cell
monocyte
40
skeletal muscle myoblast
6
hepatocyte
3
cell line
HepG2
6
smooth muscle cell of the coronary artery
6
iPSC derived cell line
2
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