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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
64
ATAC-seq
59
total RNA-seq
13
single cell RNA-seq
1
MPRA
1
snATAC-seq
Assay category
72
Transcription
65
DNA accessibility
Date released
121
August, 2021
89
February, 2021
7
May, 2022
4
February, 2023
1
October, 2022
Available data
3101
bam
2870
bigWig
1645
bed narrowPeak
1469
tsv
1217
fastq
1025
bigBed narrowPeak
358
tagAlign
321
bed broadPeak
284
bigBed broadPeak
248
bed bed3+
158
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
19
hic
16
bedpe bed3+
8
csv
7
bed bed3
5
hdf5
4
tar
3
cool
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
221
Homo sapiens
Biosample type
221
tissue
in vitro differentiated cells
1
cell line
Organ
126
kidney
88
bone element
6
pancreas
4
skeleton
1
musculature of body
Project
222
AMP
Genome assembly (visualization)
64
GRCh38
1
hg19
Lab
121
Katalin Susztak, Upenn
95
AMP-T2D consortium
6
Kyle Gaulton, UCSD
Audit category:
84
inconsistent ontology term
6
audit script error
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
222 results
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RNA microarray
ATAC-seq
total RNA-seq
single cell RNA-seq
MPRA
snATAC-seq
tissue
kidney
64
49
13
bone element
84
islet of Langerhans
6
acetabular part of hip bone
1
ilium
1
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cell line
MIN6
1
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