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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
204
DNase-seq
52
single cell RNA-seq
41
WGBS
39
ATAC-seq
34
ChIP-seq
22
snATAC-seq
5
Hi-C
2
pCHi-C
2
total RNA-seq
Assay category
265
DNA accessibility
54
Transcription
41
DNA methylation
34
DNA binding
5
3D chromatin structure
Target of assay
17
histone
17
histone modification
13
transcription factor
9
narrow histone mark
8
broad histone mark
4
control
2
RNA binding protein
Date released
187
June, 2019
135
May, 2022
26
August, 2017
19
September, 2020
9
November, 2018
8
October, 2019
4
July, 2019
3
August, 2021
3
December, 2017
2
February, 2021
2
May, 2021
2
September, 2017
1
November, 2020
Available data
3101
bam
2870
bigWig
1645
bed narrowPeak
1469
tsv
1217
fastq
1025
bigBed narrowPeak
358
tagAlign
321
bed broadPeak
284
bigBed broadPeak
248
bed bed3+
158
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
19
hic
16
bedpe bed3+
8
csv
7
bed bed3
5
hdf5
4
tar
3
cool
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
401
Homo sapiens
Biosample type
205
tissue
190
primary cell
in vitro differentiated cells
3
cell line
3
stem cell
Organ
109
pancreas
101
epithelium
78
kidney
36
limb
35
brain
34
musculature of body
30
heart
18
ureter
14
connective tissue
13
liver
13
vasculature
11
blood vessel
6
adipose tissue
4
artery
4
eye
2
nerve
2
vein
1
spleen
Project
248
AMP
153
HPAP
Genome assembly (visualization)
239
GRCh38
225
hg19
Lab
246
AMP-T2D consortium
153
Klaus Kaestner, Upenn
2
Kyle Gaulton, UCSD
Audit category:
4
inconsistent ontology term
1
audit script error
Audit category:
14
missing controlled_by
Audit category:
2
inconsistent control read length
1
inconsistent assembly
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
401 results
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DNase-seq
single cell RNA-seq
WGBS
ATAC-seq
ChIP-seq
snATAC-seq
Hi-C
pCHi-C
total RNA-seq
tissue
islet of Langerhans
21
heart
18
muscle of arm
17
brain
14
kidney
13
+ See 42 more…
primary cell
Langerhans cell
52
21
pancreatic alpha cell
25
22
pancreatic beta cell
16
13
hepatocyte
1
3
pancreatic acinar cell
4
+ See 23 more…
cell line
Panc1
1
1
HepG2
1
stem cell
hESC
3
See all biosamples
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