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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
178
ATAC-seq
135
ChIP-seq
82
snATAC-seq
47
WGBS
17
pCHi-C
10
MeRIP-seq
8
Hi-C
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
whole genome sequencing assay
Assay category
Transcription
260
DNA accessibility
135
DNA binding
47
DNA methylation
8
3D chromatin structure
1
DNA sequencing
Target of assay
117
histone
117
histone modification
65
broad histone mark
52
narrow histone mark
12
control
11
transcription factor
5
nucleotide modification
1
RNA binding protein
Date released
139
May, 2022
134
May, 2021
97
August, 2021
33
February, 2021
18
February, 2023
16
January, 2021
11
May, 2023
10
April, 2020
10
November, 2020
7
August, 2020
5
March, 2019
3
October, 2022
3
September, 2020
1
March, 2023
1
October, 2017
Available data
230
bed narrowPeak
162
bigWig
103
bam
101
zippedFastqFolder
84
tagAlign
64
xls
63
fastq
7
hic
6
tsv
5
bedpe bed3+
3
cool
2
bed broadPeak
1
bedpe
1
vcf
Organism
487
Homo sapiens
Biosample type
289
primary cell
163
tissue
in vitro differentiated cells
36
cell line
Organ
155
pancreas
105
epithelium
84
kidney
42
liver
10
lung
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
195
AMP
147
HPAP
135
T1D
10
LungMap
1
ITG
Genome assembly (visualization)
178
hg19
173
GRCh38
Lab
AMP-T2D consortium
186
Kyle Gaulton, UCSD
147
Klaus Kaestner, Upenn
82
Katalin Susztak, Upenn
28
Bing Ren, UCSD
20
Karen Mohlke, UNC
10
Rohit N. Kulkarni, M.D., Ph.D.
10
Xin Sun, UCSD
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
30
audit script error
8
inconsistent ontology term
biosample_type!
in vitro differentiated cells
lab.title!
AMP-T2D consortium
assay_slims!
Transcription
BIOSAMPLE
ASSAY
488 results
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Clear Filters
ATAC-seq
ChIP-seq
snATAC-seq
WGBS
pCHi-C
MeRIP-seq
Hi-C
STARR-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
whole genome sequencing assay
primary cell
monocyte
84
1
pancreatic alpha cell
29
31
1
Langerhans cell
48
CD8-positive, alpha-beta T cell
33
1
pancreatic beta cell
16
16
1
+ See 16 more…
tissue
kidney
75
6
1
islet of Langerhans
34
6
4
2
liver
20
lung
10
pancreas
4
+ See 1 more…
cell line
HepG2
18
1
2
1
EndoC_BH1
6
3
2
HEK293T
2
Synthesized DNA
1
See all biosamples
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