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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
451
ChIP-seq
174
single cell RNA-seq
154
ATAC-seq
134
total RNA-seq
87
RNA microarray
34
pCHi-C
28
WGBS
27
snATAC-seq
17
DNase-seq
10
MeRIP-seq
5
Hi-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
Capture-C
2
HiChIP
2
RRBS
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
GRO-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
451
DNA binding
312
Transcription
198
DNA accessibility
30
DNA methylation
5
3D chromatin structure
Target of assay
250
control
191
histone
191
histone modification
106
broad histone mark
85
narrow histone mark
15
transcription factor
9
RNA binding protein
5
nucleotide modification
4
recombinant protein
Date released
228
August, 2021
125
November, 2017
104
August, 2017
96
February, 2021
89
October, 2019
68
February, 2023
47
September, 2023
40
May, 2024
30
March, 2020
29
October, 2018
27
May, 2022
25
February, 2020
24
May, 2020
22
May, 2019
19
April, 2020
18
May, 2021
17
July, 2019
16
June, 2019
16
November, 2018
15
April, 2019
14
May, 2023
12
December, 2017
10
November, 2020
10
October, 2017
8
January, 2021
5
December, 2018
4
January, 2019
4
July, 2018
4
March, 2023
4
September, 2017
3
December, 2019
2
March, 2019
2
November, 2019
1
August, 2022
1
January, 2018
1
October, 2022
Available data
332
bam
211
bed narrowPeak
166
tsv
157
txt
144
fastq
136
tagAlign
131
bigWig
72
bigBed narrowPeak
64
xls
17
bed bedMethyl
17
bed broadPeak
17
bigBed bedMethyl
16
bed bed3+
16
bigBed broadPeak
6
csv
Organism
1131
Homo sapiens
Biosample type
1020
tissue
primary cell
113
cell line
in vitro differentiated cells
7
stem cell
Organ
212
kidney
202
heart
148
liver
124
pancreas
122
brain
88
bone element
66
connective tissue
65
blood vessel
65
vasculature
64
adipose tissue
48
artery
30
epithelium
26
eye
26
limb
21
musculature of body
20
lung
12
nerve
11
spleen
6
blood
6
bodily fluid
5
gonad
5
ovary
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1036
AMP
47
KPMP
34
T1D
19
LungMap
4
community
Genome assembly (visualization)
2325
GRCh38
hg19
1
hg18
Lab
818
AMP-T2D consortium
141
Katalin Susztak, Upenn
47
KPMP
40
Patrick T. Ellinor, Broad
39
Kyle Gaulton, UCSD
Bing Ren, UCSD
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
4
Anna Gloyn, Oxford
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
119
inconsistent ontology term
8
audit script error
Audit category:
2
missing controlled_by
biosample_type!
in vitro differentiated cells
primary cell
lab.title!
Bing Ren, UCSD
assembly!
hg19
BIOSAMPLE
ASSAY
1140 results
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Clear Filters
ChIP-seq
single cell RNA-seq
ATAC-seq
total RNA-seq
RNA microarray
pCHi-C
WGBS
snATAC-seq
DNase-seq
MeRIP-seq
Hi-C
CRISPR genome editing followed by DNA sequencing
snDrop-seq
Capture-C
HiChIP
RRBS
CRISPR RNA-seq
CRISPR genome editing followed by sgRNA sequencing
CRISPRi RNA-seq
GRO-seq
...and 3 more
tissue
kidney
7
64
75
49
6
islet of Langerhans
40
26
31
4
7
4
liver
62
1
20
1
3
bone element
84
left cardiac atrium
40
18
+ See 91 more…
cell line
HepG2
52
1
1
1
EndoC_BH1
2
16
6
3
2
2
1
Panc1
7
GM12878
6
EndoC-BH1
+ See 9 more…
stem cell
SB Ad3.1
1
1
hESC
1
mesenchymal stem cell
1
mesendoderm
1
neural progenitor cell (neural stem cell)
1
+ See 1 more…
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