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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
5
single cell RNA-seq
4
total RNA-seq
1
MPRA
1
snATAC-seq
Assay category
9
Transcription
1
DNA accessibility
Date released
89
February, 2021
4
February, 2023
1
May, 2022
1
October, 2022
Available data
2896
bam
2610
bigWig
1415
bed narrowPeak
1357
tsv
1025
bigBed narrowPeak
1022
fastq
319
bed broadPeak
284
bigBed broadPeak
274
tagAlign
246
bed bed3+
95
txt
36
bed bedMethyl
36
bigBed bedMethyl
12
hic
11
bedpe bed3+
8
csv
7
bed bed3
5
hdf5
4
tar
1
tagAlign bed3+
Organism
94
Homo sapiens
Biosample type
94
tissue
1
cell line
Organ
88
bone element
5
kidney
4
skeleton
1
musculature of body
Project
95
AMP
Genome assembly (visualization)
1
hg19
Lab
95
AMP-T2D consortium
57
Katalin Susztak, Upenn
6
Kyle Gaulton, UCSD
Audit category:
84
inconsistent ontology term
6
audit script error
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
95 results
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RNA microarray
single cell RNA-seq
total RNA-seq
MPRA
snATAC-seq
tissue
bone element
84
kidney
5
acetabular part of hip bone
1
ilium
1
ischium
1
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cell line
MIN6
1
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